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1.

A methylation clock model of mild SARS-CoV-2 infection provides insight into immune dysregulation.

Mao, Weiguang; Miller, Clare M; Nair, Venugopalan D; Ge, Yongchao; Amper, Mary Anne S; Cappuccio, Antonio; George, Mary-Catherine; Goforth, Carl W; Guevara, Kristy; Marjanovic, Nada; Nudelman, German; Pincas, Hanna; Ramos, Irene; Sealfon, Rachel S G; Soares-Schanoski, Alessandra; Vangeti, Sindhu; Vasoya, Mital; Weir, Dawn L; Zaslavsky, Elena; Kim-Schulze, Seunghee; Gnjatic, Sacha; Merad, Miriam; Letizia, Andrew G; Troyanskaya, Olga G; Sealfon, Stuart C; Chikina, Maria.

Mol Syst Biol; 19(5): e11361, 2023 05 09.

Artículo en Inglés | MEDLINE | ID: mdl-36919946

2.

Filling the gaps in the global prevalence map of clinical antimicrobial resistance.

Oldenkamp, Rik; Schultsz, Constance; Mancini, Emiliano; Cappuccio, Antonio.

Proc Natl Acad Sci U S A; 118(1)2021 01 05.

Artículo en Inglés | MEDLINE | ID: mdl-33372157

3.

Human inflammatory dendritic cells induce Th17 cell differentiation.

Segura, Elodie; Touzot, Maxime; Bohineust, Armelle; Cappuccio, Antonio; Chiocchia, Gilles; Hosmalin, Anne; Dalod, Marc; Soumelis, Vassili; Amigorena, Sebastian.

Immunity; 38(2): 336-48, 2013 Feb 21.

Artículo en Inglés | MEDLINE | ID: mdl-23352235

4.

Multiscale modelling in immunology: a review.

Cappuccio, Antonio; Tieri, Paolo; Castiglione, Filippo.

Brief Bioinform; 17(3): 408-18, 2016 05.

Artículo en Inglés | MEDLINE | ID: mdl-25810307

5.

Multiple-checkpoint inhibition of thymic stromal lymphopoietin-induced TH2 response by TH17-related cytokines.

Bogiatzi, Sofia I; Guillot-Delost, Maude; Cappuccio, Antonio; Bichet, Jean-Christophe; Chouchane-Mlik, Olfa; Donnadieu, Marie-Hélène; Barillot, Emmanuel; Hupé, Philippe; Chlichlia, Katerina; Efremidou, Eleni I; Aractingi, Selim; Bayrou, Olivier; Soumelis, Vassili.

J Allergy Clin Immunol; 130(1): 233-40.e5, 2012 Jul.

Artículo en Inglés | MEDLINE | ID: mdl-22664159

6.

Automated single-cell omics end-to-end framework with data-driven batch inference.

Wang, Yuan; Thistlethwaite, William; Tadych, Alicja; Ruf-Zamojski, Frederique; Bernard, Daniel J; Cappuccio, Antonio; Zaslavsky, Elena; Chen, Xi; Sealfon, Stuart C; Troyanskaya, Olga G.

bioRxiv; 2023 Nov 04.

Artículo en Inglés | MEDLINE | ID: mdl-37961197

7.

Blood RNA alternative splicing events as diagnostic biomarkers for infectious disease.

Zhang, Zijun; Sauerwald, Natalie; Cappuccio, Antonio; Ramos, Irene; Nair, Venugopalan D; Nudelman, German; Zaslavsky, Elena; Ge, Yongchao; Gaitas, Angelo; Ren, Hui; Brockman, Joel; Geis, Jennifer; Ramalingam, Naveen; King, David; McClain, Micah T; Woods, Christopher W; Henao, Ricardo; Burke, Thomas W; Tsalik, Ephraim L; Goforth, Carl W; Lizewski, Rhonda A; Lizewski, Stephen E; Weir, Dawn L; Letizia, Andrew G; Sealfon, Stuart C; Troyanskaya, Olga G.

Cell Rep Methods; 3(2): 100395, 2023 02 27.

Artículo en Inglés | MEDLINE | ID: mdl-36936082

8.

Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data.

Chen, Xi; Wang, Yuan; Cappuccio, Antonio; Cheng, Wan-Sze; Zamojski, Frederique Ruf; Nair, Venugopalan D; Miller, Clare M; Rubenstein, Aliza B; Nudelman, German; Tadych, Alicja; Theesfeld, Chandra L; Vornholt, Alexandria; George, Mary-Catherine; Ruffin, Felicia; Dagher, Michael; Chawla, Daniel G; Soares-Schanoski, Alessandra; Spurbeck, Rachel R; Ndhlovu, Lishomwa C; Sebra, Robert; Kleinstein, Steven H; Letizia, Andrew G; Ramos, Irene; Fowler, Vance G; Woods, Christopher W; Zaslavsky, Elena; Troyanskaya, Olga G; Sealfon, Stuart C.

Nat Comput Sci; 3(7): 644-657, 2023 Jul.

Artículo en Inglés | MEDLINE | ID: mdl-37974651

9.

Toll-like receptor control of glucocorticoid-induced apoptosis in human plasmacytoid predendritic cells (pDCs).

Lepelletier, Yves; Zollinger, Raphaël; Ghirelli, Cristina; Raynaud, Françoise; Hadj-Slimane, Réda; Cappuccio, Antonio; Hermine, Olivier; Liu, Yong-Jun; Soumelis, Vassili.

Blood; 116(18): 3389-97, 2010 Nov 04.

Artículo en Inglés | MEDLINE | ID: mdl-20592251

10.

Benchmarking transcriptional host response signatures for infection diagnosis.

Chawla, Daniel G; Cappuccio, Antonio; Tamminga, Andrea; Sealfon, Stuart C; Zaslavsky, Elena; Kleinstein, Steven H.

Cell Syst; 13(12): 974-988.e7, 2022 12 21.

Artículo en Inglés | MEDLINE | ID: mdl-36549274

11.

Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature.

Cappuccio, Antonio; Chawla, Daniel G; Chen, Xi; Rubenstein, Aliza B; Cheng, Wan Sze; Mao, Weiguang; Burke, Thomas W; Tsalik, Ephraim L; Petzold, Elizabeth; Henao, Ricardo; McClain, Micah T; Woods, Christopher W; Chikina, Maria; Troyanskaya, Olga G; Sealfon, Stuart C; Kleinstein, Steven H; Zaslavsky, Elena.

Cell Syst; 13(12): 989-1001.e8, 2022 12 21.

Artículo en Inglés | MEDLINE | ID: mdl-36549275

12.

Asymptomatic SARS-CoV-2 Infection Is Associated With Higher Levels of Serum IL-17C, Matrix Metalloproteinase 10 and Fibroblast Growth Factors Than Mild Symptomatic COVID-19.

Soares-Schanoski, Alessandra; Sauerwald, Natalie; Goforth, Carl W; Periasamy, Sivakumar; Weir, Dawn L; Lizewski, Stephen; Lizewski, Rhonda; Ge, Yongchao; Kuzmina, Natalia A; Nair, Venugopalan D; Vangeti, Sindhu; Marjanovic, Nada; Cappuccio, Antonio; Cheng, Wan Sze; Mofsowitz, Sagie; Miller, Clare M; Yu, Xuechen B; George, Mary-Catherine; Zaslavsky, Elena; Bukreyev, Alexander; Troyanskaya, Olga G; Sealfon, Stuart C; Letizia, Andrew G; Ramos, Irene.

Front Immunol; 13: 821730, 2022.

Artículo en Inglés | MEDLINE | ID: mdl-35479098

13.

Advances in the computational landscape for repurposed drugs against COVID-19.

Aronskyy, Illya; Masoudi-Sobhanzadeh, Yosef; Cappuccio, Antonio; Zaslavsky, Elena.

Drug Discov Today; 26(12): 2800-2815, 2021 12.

Artículo en Inglés | MEDLINE | ID: mdl-34339864

14.

Dissection of intercellular communication using the transcriptome-based framework ICELLNET.

Noël, Floriane; Massenet-Regad, Lucile; Carmi-Levy, Irit; Cappuccio, Antonio; Grandclaudon, Maximilien; Trichot, Coline; Kieffer, Yann; Mechta-Grigoriou, Fatima; Soumelis, Vassili.

Nat Commun; 12(1): 1089, 2021 02 17.

Artículo en Inglés | MEDLINE | ID: mdl-33597528

15.

Deciphering the combinatorial landscape of immunity.

Cappuccio, Antonio; Jensen, Shane T; Hartmann, Boris M; Sealfon, Stuart C; Soumelis, Vassili; Zaslavsky, Elena.

Elife; 92020 11 23.

Artículo en Inglés | MEDLINE | ID: mdl-33225996

16.

Eleven grand challenges in single-cell data science.

Lähnemann, David; Köster, Johannes; Szczurek, Ewa; McCarthy, Davis J; Hicks, Stephanie C; Robinson, Mark D; Vallejos, Catalina A; Campbell, Kieran R; Beerenwinkel, Niko; Mahfouz, Ahmed; Pinello, Luca; Skums, Pavel; Stamatakis, Alexandros; Attolini, Camille Stephan-Otto; Aparicio, Samuel; Baaijens, Jasmijn; Balvert, Marleen; Barbanson, Buys de; Cappuccio, Antonio; Corleone, Giacomo; Dutilh, Bas E; Florescu, Maria; Guryev, Victor; Holmer, Rens; Jahn, Katharina; Lobo, Thamar Jessurun; Keizer, Emma M; Khatri, Indu; Kielbasa, Szymon M; Korbel, Jan O; Kozlov, Alexey M; Kuo, Tzu-Hao; Lelieveldt, Boudewijn P F; Mandoiu, Ion I; Marioni, John C; Marschall, Tobias; Mölder, Felix; Niknejad, Amir; Raczkowska, Alicja; Reinders, Marcel; Ridder, Jeroen de; Saliba, Antoine-Emmanuel; Somarakis, Antonios; Stegle, Oliver; Theis, Fabian J; Yang, Huan; Zelikovsky, Alex; McHardy, Alice C; Raphael, Benjamin J; Shah, Sohrab P.

Genome Biol; 21(1): 31, 2020 02 07.

Artículo en Inglés | MEDLINE | ID: mdl-32033589

17.

Plausibility of stromal initiation of epithelial cancers without a mutation in the epithelium: a computer simulation of morphostats.

Baker, Stuart G; Soto, Ana M; Sonnenschein, Carlos; Cappuccio, Antonio; Potter, John D; Kramer, Barnett S.

BMC Cancer; 9: 89, 2009 Mar 23.

Artículo en Inglés | MEDLINE | ID: mdl-19309499

18.

Biological optimization of tumor radiosurgery.

Cappuccio, Antonio; Herrero, Miguel A; Nuñez, Luis.

Med Phys; 36(1): 98-104, 2009 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-19235378

19.

A one-mutation mathematical model can explain the age incidence of acute myeloid leukemia with mutated nucleophosmin (NPM1).

Liso, Arcangelo; Castiglione, Filippo; Cappuccio, Antonio; Stracci, Fabrizio; Schlenk, Richard F; Amadori, Sergio; Thiede, Christian; Schnittger, Susanne; Valk, Peter J M; Döhner, Konstanze; Martelli, Massimo F; Schaich, Markus; Krauter, Jürgen; Ganser, Arnold; Martelli, Maria P; Bolli, Niccolò; Löwenberg, Bob; Haferlach, Torsten; Ehninger, Gerhard; Mandelli, Franco; Döhner, Hartmut; Michor, Franziska; Falini, Brunangelo.

Haematologica; 93(8): 1219-26, 2008 Aug.

Artículo en Inglés | MEDLINE | ID: mdl-18603563

20.

Cancer immunotherapy by interleukin-21: potential treatment strategies evaluated in a mathematical model.

Cappuccio, Antonio; Elishmereni, Moran; Agur, Zvia.

Cancer Res; 66(14): 7293-300, 2006 Jul 15.

Artículo en Inglés | MEDLINE | ID: mdl-16849579

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